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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ih6 1EP Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ih6 1EPGenome polyprotein 2.7.7.48 0.912
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3tyv HI3Genome polyprotein 2.7.7.48 0.712
4mka 2AYGenome polyprotein 2.7.7.48 0.703
4ih7 1ERGenome polyprotein 2.7.7.48 0.692
3u4r 08FGenome polyprotein 2.7.7.48 0.691
4mkb 28VGenome polyprotein 2.7.7.48 0.662
3gnv XNZGenome polyprotein 2.7.7.48 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4mk9 28RGenome polyprotein 2.7.7.48 0.651