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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4hu1 V13 Carbonic anhydrase 13 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4hu1 V13Carbonic anhydrase 13 4.2.1.1 0.889
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.688
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.688
4uov AZMCarbonate dehydratase / 0.681
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.680
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.679
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.678
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.676
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.674
4xiw AZMCarbonic anhydrase, alpha type / 0.672
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.671
1okl MNSCarbonic anhydrase 2 4.2.1.1 0.671
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.665
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.661
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.661
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.660
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.659
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.659
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.659
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.659
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.658
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.658
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.656
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.656
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.655
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.654
3myq E27Carbonic anhydrase 2 4.2.1.1 0.653
1okm SABCarbonic anhydrase 2 4.2.1.1 0.651
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.651