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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4h6u ACO Alpha-tubulin N-acetyltransferase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4h6u ACOAlpha-tubulin N-acetyltransferase 1 / 1.332
4if5 ACOAlpha-tubulin N-acetyltransferase 1 / 1.013
4b5o ACOAlpha-tubulin N-acetyltransferase 1 / 0.975
4b5p ACOAlpha-tubulin N-acetyltransferase 1 / 0.963
3vwd ACOAlpha-tubulin N-acetyltransferase 1 / 0.961
3vwe COAAlpha-tubulin N-acetyltransferase 1 / 0.949
4u9z COAAlpha-tubulin N-acetyltransferase 1 / 0.939
4u9y COAAlpha-tubulin N-acetyltransferase 1 / 0.909
4gs4 ACOAlpha-tubulin N-acetyltransferase 1 / 0.865
4h6z ACOAlpha-tubulin N-acetyltransferase 1 / 0.861
4hkf ACOAlpha-tubulin N-acetyltransferase 1 / 0.813
3gy9 COAGCN5-related N-acetyltransferase / 0.744
3f0a ACOSpermidine N(1)-acetyltransferase / 0.738
4kub COAUncharacterized protein / 0.705
3pgp ACOUncharacterized protein / 0.704
2cnt COARibosomal-protein-alanine acetyltransferase / 0.693
4lx9 ACON-alpha-acetyltransferase 2.3.1 0.691
3mgd ACOPredicted acetyltransferase / 0.685
2vxk COAGlucosamine 6-phosphate acetyltransferase, putative / 0.672
2x7b COAN-alpha-acetyltransferase 2.3.1 0.672
1b87 ACOAac(6')-Ii protein / 0.671
1kuy COTSerotonin N-acetyltransferase / 0.661
2c27 ACOMycothiol acetyltransferase 2.3.1.189 0.661
1cjw COTSerotonin N-acetyltransferase / 0.659
2cy2 ACOProbable acetyltransferase / 0.659
2jdd ACOProbable acetyltransferase / 0.652
4ag9 COAGlucosamine 6-phosphate N-acetyltransferase / 0.650