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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4h5t ADP Heat shock cognate 71 kDa protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4h5t ADPHeat shock cognate 71 kDa protein / 0.807
2qwl ADPHeat shock cognate 71 kDa protein / 0.776
1ngb ADPHeat shock cognate 71 kDa protein / 0.772
1ngd ADPHeat shock cognate 71 kDa protein / 0.771
3fe1 ADPHeat shock 70 kDa protein 6 / 0.754
2qwn ADPHeat shock cognate 71 kDa protein / 0.751
3hsc ADPHeat shock cognate 71 kDa protein / 0.751
1ngc ADPHeat shock cognate 71 kDa protein / 0.749
2qwq ADPHeat shock cognate 71 kDa protein / 0.740
1ats ADPHeat shock cognate 71 kDa protein / 0.715
1ngj ANPHeat shock cognate 71 kDa protein / 0.713
2qwr ANPHeat shock cognate 71 kDa protein / 0.704
3ldl ATP78 kDa glucose-regulated protein / 0.702
3ldo ANP78 kDa glucose-regulated protein / 0.701
1atr ADPHeat shock cognate 71 kDa protein / 0.699
1ngh ATPHeat shock cognate 71 kDa protein / 0.699
5f2r ACP78 kDa glucose-regulated protein / 0.690
1ngi ANPHeat shock cognate 71 kDa protein / 0.685
1nge ATPHeat shock cognate 71 kDa protein / 0.684
5f1x ATP78 kDa glucose-regulated protein / 0.673
3ule ATPActin-related protein 2 / 0.661
1gy3 ATPCyclin-dependent kinase 2 2.7.11.22 0.651