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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4h49 L29 Macrophage metalloelastase 3.4.24.65

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4h49 L29Macrophage metalloelastase 3.4.24.65 1.673
4h76 10BMacrophage metalloelastase 3.4.24.65 0.874
4h30 0ZDMacrophage metalloelastase 3.4.24.65 0.868
2w0d CGSMacrophage metalloelastase 3.4.24.65 0.760
1bqo N25Stromelysin-1 3.4.24.17 0.753
4ja1 NGHStromelysin-1 3.4.24.17 0.738
1zxc IH6Disintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.723
2d1o FA4Stromelysin-1 3.4.24.17 0.718
1bzs BSINeutrophil collagenase 3.4.24.34 0.717
1zs0 EINNeutrophil collagenase 3.4.24.34 0.713
4dpe NGHStromelysin-1 3.4.24.17 0.701
4guy KLJMacrophage metalloelastase 3.4.24.65 0.691
3oho Z79Stromelysin-1 3.4.24.17 0.690
3zxh E41Collagenase 3 3.4.24 0.681
2woa 576Macrophage metalloelastase 3.4.24.65 0.679
3kry 3KRCollagenase 3 3.4.24 0.678
4g9l NGHStromelysin-1 3.4.24.17 0.671
1g49 111Stromelysin-1 3.4.24.17 0.655