Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4h3y SAH tRNA (guanine-N(1)-)-methyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4h3y SAHtRNA (guanine-N(1)-)-methyltransferase / 0.942
4h3z SAHtRNA (guanine-N(1)-)-methyltransferase / 0.907
4yvh SFGtRNA (guanine-N(1)-)-methyltransferase 2.1.1.228 0.756
1uam SAHtRNA (guanine-N(1)-)-methyltransferase 2.1.1.228 0.745
4yvj SFGtRNA (guanine-N(1)-)-methyltransferase 2.1.1.228 0.719
1p9p SAHtRNA (guanine-N(1)-)-methyltransferase / 0.713
4ig6 SAHtRNA (guanine-N(1)-)-methyltransferase / 0.703
1ual SAHtRNA (guanine-N(1)-)-methyltransferase 2.1.1.228 0.702
4yvk SFGtRNA (guanine-N(1)-)-methyltransferase 2.1.1.228 0.701
4fak SAMRibosomal RNA large subunit methyltransferase H / 0.697
4jwh SAHtRNA (guanine(9)-N1)-methyltransferase / 0.683
3bbd SAHRibosomal RNA small subunit methyltransferase Nep1 2.1.1 0.673
3n4k SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.665
3oii SAHRibosomal RNA small subunit methyltransferase NEP1 / 0.660
2ha8 SAHProbable methyltransferase TARBP1 / 0.658
2z0y SAMRibosomal RNA small subunit methyltransferase E / 0.658
2egw SAHRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.655
4jwj SAHtRNA (guanine(9)-N1)-methyltransferase / 0.650