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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4h1v GNP Dynamin-1-like protein 3.6.5.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4h1v GNPDynamin-1-like protein 3.6.5.5 0.914
4tq9 GDPGTPase KRas / 0.705
1zc4 GNPRas-related protein Ral-A / 0.703
3cx8 GSPGuanine nucleotide-binding protein subunit alpha-13 / 0.702
3tnf GNPRas-related protein Rab-8A / 0.693
3ea5 GDPGTP-binding nuclear protein Ran / 0.689
1uad GNPRas-related protein Ral-A / 0.682
2rgc GNPGTPase HRas / 0.681
3a6p GTPGTP-binding nuclear protein Ran / 0.681
3vhx GTPADP-ribosylation factor 6 / 0.681
4dlx GNPGTPase HRas / 0.680
1n6l GTPRas-related protein Rab-5A / 0.679
4goj GNPADP-ribosylation factor-like protein 3 / 0.679
4lhw GNPRas-related protein Rab-8A / 0.679
3qe0 GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.678
4pan GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.678
3mjh GTPRas-related protein Rab-5A / 0.677
2ce2 GDPGTPase HRas / 0.674
3kz1 GSPTransforming protein RhoA / 0.674
1zd9 GDPADP-ribosylation factor-like protein 8A / 0.672
3w3z GTPGTP-binding nuclear protein Ran / 0.672
3ieu GDPGTPase Era / 0.670
3r9x GNPGTPase Era / 0.670
3bbp GTPRas-related protein Rab-6A / 0.669
1yu9 GNPRas-related protein Rab-4A / 0.666
2j5x GSPADP-ribosylation factor 6 / 0.666
2xtz GSPGuanine nucleotide-binding protein alpha-1 subunit / 0.666
4epx GDPGTPase KRas / 0.666
1gp2 GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.664
3oes GNPGTPase RhebL1 / 0.664
4dlz GNPGTPase HRas / 0.664
4g01 GDPRas-related protein RABF2b / 0.664
1vg8 GNPRas-related protein Rab-7a / 0.662
1z0f GDPRas-related protein Rab-14 / 0.661
4o2l GTPGTP-binding protein Rheb / 0.661
1yra GDPGPN-loop GTPase PAB0955 / 0.660
2xto GDPGTPase IMAP family member 2 / 0.660
3x1w GDPRas-related protein Rap-1b / 0.660
4dsu GDPGTPase KRas / 0.660
4wa7 GDPGTPase KRas / 0.660
3e5h GNPRas-related protein Rab-28 / 0.659
3kud GDPGTPase HRas / 0.658
4hdq GNPRas-related protein Rap-1b / 0.658
1z0a GDPRas-related protein Rab-2A / 0.657
2w2x GSPRas-related C3 botulinum toxin substrate 2 / 0.657
3kko GNPRas-related protein M-Ras / 0.657
4dsn GCPGTPase KRas / 0.657
4g5q GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.657
4k81 GTPGTPase HRas / 0.657
4q02 GDPGTPase KRas / 0.657
1wa5 GTPGTP-binding nuclear protein Ran / 0.656
3dm5 GDPSignal recognition particle 54 kDa protein / 0.656
4lv6 GDPGTPase KRas / 0.656
1yzq GNPRas-related protein Rab-6A / 0.655
4y0v GDPADP-ribosylation factor 1, putative / 0.654
4ylg GDPADP-ribosylation factor 1, putative / 0.654
5dha GNPGTP-binding nuclear protein Ran / 0.654
1oix GDPRas-related protein Rab-11A / 0.652
3sbe GNPRas-related C3 botulinum toxin substrate 1 / 0.652
2ffq GSPRas-related protein Rab-6B / 0.651
5jlj GNPGTP-binding nuclear protein Ran / 0.651
1zc3 GNPRas-related protein Ral-A / 0.650
2w2v GTPRas-related C3 botulinum toxin substrate 2 / 0.650