Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gv8 DUP DUTPase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4gv8 DUPDUTPase / 1.197
4wrk DUPDUTPase / 0.982
2v9x DUTdCTP deaminase / 0.867
2we3 DUTDeoxyuridine 5'-triphosphate nucleotidohydrolase / 0.831
1xs4 DCPdCTP deaminase / 0.795
4xjc TTPdCTP deaminase / 0.790
2ol0 DUDDUTP pyrophosphatase / 0.776
2hxd DUPdCTP deaminase, dUMP-forming 3.5.4.30 0.745
1snf UMPDeoxyuridine 5'-triphosphate nucleotidohydrolase 3.6.1.23 0.734
4a6a TTPdCTP deaminase 3.5.4.13 0.728
2qxx TTPdCTP deaminase 3.5.4.13 0.725
4bri UNPEctonucleoside triphosphate diphosphohydrolase I / 0.697
2oke DUPDUTP pyrophosphatase / 0.689
2j4q TTPdCTP deaminase / 0.687
3gf4 UPGUDP-galactopyranose mutase 5.4.99.9 0.658
4iei ADPGene 2 protein / 0.656
1mx0 ANPType 2 DNA topoisomerase 6 subunit B / 0.654
2j4l UTPUridylate kinase 2.7.4.22 0.654
3rl3 5GPMetallophosphoesterase MPPED2 3.1 0.653
2cvv ANPRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.650