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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gol SA8 DNA adenine methylase 2.1.1.72

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4gol SA8DNA adenine methylase 2.1.1.72 0.924
4rts SAMDNA adenine methylase 2.1.1.72 0.813
2ore SAHDNA adenine methylase 2.1.1.72 0.801
4rtn SAHDNA adenine methylase 2.1.1.72 0.791
4rtq SAHDNA adenine methylase 2.1.1.72 0.772
4rtr SAMDNA adenine methylase 2.1.1.72 0.767
4rtj SFGDNA adenine methylase 2.1.1.72 0.751
4rto SFGDNA adenine methylase 2.1.1.72 0.750
1nw6 SFGModification methylase RsrI 2.1.1.72 0.741
4gbe SAHDNA adenine methylase 2.1.1.72 0.741
4rtm SAMDNA adenine methylase 2.1.1.72 0.738
4rtk SAHDNA adenine methylase 2.1.1.72 0.737
2g1p SAHDNA adenine methylase 2.1.1.72 0.726
1eg2 MTAModification methylase RsrI 2.1.1.72 0.713
2dpm SAMModification methylase DpnIIA 2.1.1.72 0.713
4rtp SAMDNA adenine methylase 2.1.1.72 0.701
3bgi SAHThiopurine S-methyltransferase 2.1.1.67 0.698
1nw5 SAMModification methylase RsrI 2.1.1.72 0.693
4rtl SFGDNA adenine methylase 2.1.1.72 0.682
1uay ADNOxidoreductase / 0.677
2bzg SAHThiopurine S-methyltransferase 2.1.1.67 0.672
5e72 SAMN2, N2-dimethylguanosine tRNA methyltransferase / 0.670
4fzv SAM5-methylcytosine rRNA methyltransferase NSUN4 2.1.1 0.661
1boo SAHModification methylase PvuII 2.1.1.113 0.658
1yf3 SAHDNA adenine methylase / 0.656
2cww SAHUncharacterized protein / 0.656
1g60 SAMModification methylase MboII 2.1.1.72 0.655
2i9k SAHModification methylase HhaI 2.1.1.37 0.652
3tm4 SAMUncharacterized protein / 0.652
1skm SAHModification methylase HhaI 2.1.1.37 0.651
7mht SAHModification methylase HhaI 2.1.1.37 0.651