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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gi5 FAD Putative NAD(P)H dehydrogenase (Quinone)

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4gi5 FADPutative NAD(P)H dehydrogenase (Quinone) / 1.438
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.894
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.891
3lcm FADPutative oxidoreductase / 0.878
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.873
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.866
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.865
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.863
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.859
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.858
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.849
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.840
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.839
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.826
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.811
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.800
1qr2 FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.799
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.797
2z9d FMNFMN-dependent NADH-azoreductase / 0.792
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.770
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.762
4j8p FMNFlavodoxin / 0.761
3klb FMNUncharacterized protein / 0.744
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.743
1t5b FMNFMN-dependent NADH-azoreductase / 0.741
2r97 FMNNAD(P)H dehydrogenase (quinone) / 0.738
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.738
2ohj FMNType A flavoprotein FprA 1 0.734
3w77 FMNFMN-dependent NADH-azoreductase / 0.733
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.728
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.725
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.722
4dy4 FMNNAD(P)H dehydrogenase (quinone) / 0.701
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.700
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.698
4cw5 FMNDfnA / 0.697
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 0.695
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.692
1wyg FADXanthine dehydrogenase/oxidase / 0.690
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 0.686
4k7y FMNNADPH dehydrogenase 1 1.6.99.1 0.684
4b5n FMNNAD(P)H:flavin oxidoreductase Sye4 / 0.680
1ych FMNNitric oxide reductase 1 0.676
4r81 FMNPredicted NADH dehydrogenase / 0.672
3rpe FADPutative modulator of drug activity / 0.664
3hf3 FMNChromate reductase / 0.663
4bf9 FMNtRNA-dihydrouridine(16) synthase / 0.658
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.655
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.652
3f03 FMNPentaerythritol tetranitrate reductase / 0.651
4rnu FMNNADPH dehydrogenase 1 1.6.99.1 0.650