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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gfv PRO_GLU_LEU_THR_PTR Tyrosine-protein phosphatase non-receptor type 18 3.1.3.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4gfv PRO_GLU_LEU_THR_PTRTyrosine-protein phosphatase non-receptor type 18 3.1.3.48 1.218
2fjm 073Tyrosine-protein phosphatase non-receptor type 1 3.1.3.48 0.824
4ge5 A89Tyrosine-protein phosphatase non-receptor type 9 3.1.3.48 0.791
1q6t 600Tyrosine-protein phosphatase non-receptor type 1 3.1.3.48 0.777
2fjn 073Tyrosine-protein phosphatase non-receptor type 1 3.1.3.48 0.737
1jf7 TBHTyrosine-protein phosphatase non-receptor type 1 3.1.3.48 0.716
1q6p 213Tyrosine-protein phosphatase non-receptor type 1 3.1.3.48 0.716
1q6s 214Tyrosine-protein phosphatase non-receptor type 1 3.1.3.48 0.716
4kp7 1UQ1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic 1.1.1.267 0.663
5bnt NAPAspartate-semialdehyde dehydrogenase 1.2.1.11 0.660
1u5a BIKL-lactate dehydrogenase 1.1.1.27 0.654