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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gc9 SAM Dimethyladenosine transferase 1, mitochondrial 2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4gc9 SAMDimethyladenosine transferase 1, mitochondrial 2.1.1 0.952
3bgi SAHThiopurine S-methyltransferase 2.1.1.67 0.692
3sso SAHMycinamicin VI 2''-O-methyltransferase / 0.688
3go4 SAHUncharacterized protein / 0.676
5ccb SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.670
2zzm SAMtRNA (guanine(37)-N1)-methyltransferase Trm5b 2.1.1.228 0.668
4gek GEKCarboxy-S-adenosyl-L-methionine synthase / 0.668
5ccx SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.667
5fa5 MTAProtein arginine N-methyltransferase 5 / 0.667
2vdv SAMtRNA (guanine-N(7)-)-methyltransferase / 0.665
3ou2 SAHSAM-dependent methyltransferase / 0.662
1qan SAHrRNA adenine N-6-methyltransferase 2.1.1.184 0.661
2bh2 SAH23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD / 0.660
4hc4 SAHProtein arginine N-methyltransferase 6 / 0.658
3ou6 SAMSAM-dependent methyltransferase / 0.655
5e72 SAMN2, N2-dimethylguanosine tRNA methyltransferase / 0.654
3orh SAHGuanidinoacetate N-methyltransferase 2.1.1.2 0.651
3lcu SAH16S rRNA (guanine(1405)-N(7))-methyltransferase 2.1.1.179 0.650