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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4g3p UD1 Bifunctional protein GlmU

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4g3p UD1Bifunctional protein GlmU / 1.279
4g3q UD1Bifunctional protein GlmU / 1.257
4g3s UD1Bifunctional protein GlmU / 1.175
3dj4 UD1Bifunctional protein GlmU / 1.163
3spt UD1Bifunctional protein GlmU / 1.054
1hv9 UD1Bifunctional protein GlmU / 1.007
2oi6 UD1Bifunctional protein GlmU / 0.854
1fwy UD1Bifunctional protein GlmU / 0.824
4m2b UPGUDP-glucose pyrophosphorylase / 0.808
2v0i UD1Bifunctional protein GlmU / 0.803
3d8v UD1Bifunctional protein GlmU / 0.789
4m2a UPGUDP-glucose pyrophosphorylase / 0.767
1jvd UD1UDP-N-acetylhexosamine pyrophosphorylase 2.7.7.23 0.755
2oeg UPGUDP-glucose pyrophosphorylase / 0.742
3gue UPGUTP-glucose-1-phosphate uridylyltransferase 2, putative / 0.715
2yqj UD1UDP-N-acetylglucosamine pyrophosphorylase 2.7.7.23 0.691
1g1l DAUGlucose-1-phosphate thymidylyltransferase / 0.688
1h5t DAUGlucose-1-phosphate thymidylyltransferase 1 / 0.673
2x5z GDDMannose-1-phosphate guanylyltransferase / 0.671
2x60 GTPMannose-1-phosphate guanylyltransferase / 0.671
2yqs UD1UDP-N-acetylglucosamine pyrophosphorylase 2.7.7.23 0.665