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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4g2w NI0 cGMP-specific 3',5'-cyclic phosphodiesterase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4g2w NI0cGMP-specific 3',5'-cyclic phosphodiesterase / 1.101
4oex 5EOcGMP-specific 3',5'-cyclic phosphodiesterase / 0.905
4oew 5IOcGMP-specific 3',5'-cyclic phosphodiesterase / 0.902
4g2y NI5cGMP-specific 3',5'-cyclic phosphodiesterase / 0.856
4i9z 5BAcGMP-specific 3',5'-cyclic phosphodiesterase / 0.815
4ia0 5BBcGMP-specific 3',5'-cyclic phosphodiesterase / 0.768
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3bjc WANcGMP-specific 3',5'-cyclic phosphodiesterase / 0.739
1udt VIAcGMP-specific 3',5'-cyclic phosphodiesterase / 0.730
2h42 VIAcGMP-specific 3',5'-cyclic phosphodiesterase / 0.730
1uho VDNcGMP-specific 3',5'-cyclic phosphodiesterase / 0.667
4e5f 0N7Polymerase acidic protein / 0.660