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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fv5 EK9 Mitogen-activated protein kinase 1 2.7.11.24

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4fv5 EK9Mitogen-activated protein kinase 1 2.7.11.24 1.031
3i60 E86Mitogen-activated protein kinase 1 2.7.11.24 0.847
4fv6 E57Mitogen-activated protein kinase 1 2.7.11.24 0.837
3i5z Z48Mitogen-activated protein kinase 1 2.7.11.24 0.834
3i4b Z48Glycogen synthase kinase-3 beta 2.7.11.26 0.746