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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fry NAD Putative signal-transduction protein with CBS domains

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4fry NADPutative signal-transduction protein with CBS domains / 1.293
2rc3 NADCBS domain / 1.040
4eaj ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.690
4eak ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.690
3fws ANPTranscriptional repressor CcpN / 0.674
1ank ANPAdenylate kinase / 0.670
3fwr ADPTranscriptional repressor CcpN / 0.661
4ike ADPAdenylate kinase / 0.658
4jld ADPAdenylate kinase / 0.656
3i0p NADMalate dehydrogenase, putative / 0.652
4cf7 ADPAdenylate kinase / 0.651