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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fl0 PLP Aminotransferase ALD1, chloroplastic 2.6.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4fl0 PLPAminotransferase ALD1, chloroplastic 2.6.1 1.072
1akb PPDAspartate aminotransferase, mitochondrial 2.6.1.1 0.762
4rkd KETAminotransferase / 0.716
1u08 PLPMethionine aminotransferase / 0.708
1maq PGUAspartate aminotransferase, mitochondrial 2.6.1.1 0.684
1akc PPEAspartate aminotransferase, mitochondrial 2.6.1.1 0.683
4eb5 PLPCysteine desulfurase IscS 2 / 0.676
4wlj IK2Kynurenine--oxoglutarate transaminase 1 2.6.1.7 0.676
4emy PLPAminotransferase class I and II / 0.664
1cq6 PY4Aspartate aminotransferase 2.6.1.1 0.663
1map KETAspartate aminotransferase, mitochondrial 2.6.1.1 0.663
3lqs PSZD-alanine aminotransferase 2.6.1.21 0.657
4eb7 PLPCysteine desulfurase IscS 2 / 0.653
1c7o PPGHemolysin / 0.652
2zza FOLDihydrofolate reductase / 0.652
4ge7 0K5Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.651
4geb 0LDKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.651