Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
4fe6 | 0TQ | Gag-Pol polyprotein | 3.4.23.16 |
PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
---|---|---|---|---|---|
4fe6 | 0TQ | Gag-Pol polyprotein | 3.4.23.16 | 0.944 | |
3ucb | 017 | Gag-Pol polyprotein | / | 0.802 | |
3t3c | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.784 | |
3lzv | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.782 | |
3ekt | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.780 | |
3nu9 | 478 | Gag-Pol polyprotein | 3.4.23.16 | 0.771 | |
2f80 | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.768 | |
3oxw | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.767 | |
3em6 | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.765 | |
4dqe | 017 | Gag-Pol polyprotein | / | 0.763 | |
1t7i | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.762 | |
2f81 | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.762 | |
3o99 | K13 | Pol polyprotein | / | 0.756 | |
4q1y | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.754 | |
1g7u | PEP | 2-dehydro-3-deoxyphosphooctonate aldolase | 2.5.1.55 | 0.744 | |
4q1x | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.744 | |
3lzu | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.737 | |
3bvb | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.736 | |
2hs1 | 017 | Protease | / | 0.735 | |
2ien | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.728 | |
3d20 | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.728 | |
3pwm | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.726 | |
4hla | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.725 | |
3o9e | A60 | Pol polyprotein | / | 0.715 | |
3oxv | 478 | Gag-Pol polyprotein | 3.4.23.16 | 0.714 | |
4kb9 | G79 | Protease | / | 0.705 | |
3sac | AF8 | Protease | / | 0.704 | |
4djo | MK5 | Pol polyprotein | / | 0.698 | |
3i6o | GR6 | Gag-Pol polyprotein | 3.4.23.16 | 0.697 | |
1siv | PSI | Gag-Pol polyprotein | / | 0.694 | |
2f8g | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.694 | |
3ok9 | G52 | Gag-Pol polyprotein | 3.4.23.16 | 0.693 | |
3ecg | 065 | Gag-Pol polyprotein | 3.4.23.47 | 0.691 | |
3ec0 | GRL | Gag-Pol polyprotein | 3.4.23.47 | 0.688 | |
3sa6 | F71 | Protease | / | 0.688 | |
1z1r | HBH | Gag-Pol polyprotein | 3.4.23.16 | 0.685 | |
3nu6 | 478 | Gag-Pol polyprotein | 3.4.23.16 | 0.684 | |
4dfg | 0JV | Gag-Pol polyprotein | 3.4.23.16 | 0.681 | |
4dqh | 017 | Gag-Pol polyprotein | / | 0.681 | |
4hdf | G52 | Gag-Pol polyprotein | 3.4.23.16 | 0.678 | |
4heg | G52 | Gag-Pol polyprotein | 3.4.23.16 | 0.675 | |
3ekp | 478 | Gag-Pol polyprotein | 3.4.23.16 | 0.671 | |
1yt9 | OIS | Gag-Pol polyprotein | / | 0.669 | |
1d4l | PI9 | Gag-Pol polyprotein | 3.4.23.16 | 0.667 | |
3cyw | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.667 | |
3ttp | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.665 | |
2qi0 | MZ3 | Gag-Pol polyprotein | / | 0.662 | |
3qaa | G04 | Gag-Pol polyprotein | 3.4.23.16 | 0.661 | |
2fdd | 385 | Pol protein | / | 0.660 | |
2qd7 | 065 | Gag-Pol polyprotein | 3.4.23.16 | 0.660 | |
4e5f | 0N7 | Polymerase acidic protein | / | 0.660 | |
4i8z | G08 | Gag-Pol polyprotein | 3.4.23.16 | 0.655 |