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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fcw ADP Chaperone protein ClpB

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4fcw ADPChaperone protein ClpB / 1.006
4lja ACPChaperone protein ClpB / 0.780
4lj8 ADPChaperone protein ClpB / 0.765
4lj7 MNTChaperone protein ClpB / 0.758
4lj6 ACPChaperone protein ClpB / 0.748
4lj9 ACPChaperone protein ClpB / 0.748
4lj5 ADPChaperone protein ClpB / 0.709
1ht2 ADPATP-dependent protease ATPase subunit HslU / 0.666
3sbe GNPRas-related C3 botulinum toxin substrate 1 / 0.666
1qvr ANPChaperone protein ClpB / 0.662
3kud GDPGTPase HRas / 0.653
2r5t ANPSerine/threonine-protein kinase Sgk1 2.7.11.1 0.650