3.000 Å
X-ray
2003-08-28
| Name: | Chaperone protein ClpB |
|---|---|
| ID: | CLPB_THET8 |
| AC: | Q9RA63 |
| Organism: | Thermus thermophilus |
| Reign: | Bacteria |
| TaxID: | 300852 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 89 % |
| B | 11 % |
| B-Factor: | 74.070 |
|---|---|
| Number of residues: | 35 |
| Including | |
| Standard Amino Acids: | 35 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.375 | 884.250 |
| % Hydrophobic | % Polar |
|---|---|
| 35.50 | 64.50 |
| According to VolSite | |

| HET Code: | ANP |
|---|---|
| Formula: | C10H13N6O12P3 |
| Molecular weight: | 502.164 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 58.58 % |
| Polar Surface area: | 322.68 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 16 |
| H-Bond Donors: | 4 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 74.094 | 6.58571 | 15.9109 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| N6 | O | VAL- 561 | 2.71 | 140.5 | H-Bond (Ligand Donor) |
| N1 | N | VAL- 561 | 2.66 | 162.9 | H-Bond (Protein Donor) |
| N6 | O | VAL- 599 | 3.1 | 162.42 | H-Bond (Ligand Donor) |
| O1A | N | GLY- 600 | 2.74 | 121.9 | H-Bond (Protein Donor) |
| O1B | OG1 | THR- 602 | 3.29 | 121.45 | H-Bond (Protein Donor) |
| O2B | OG1 | THR- 602 | 3.13 | 172.28 | H-Bond (Protein Donor) |
| O1A | N | GLU- 603 | 3.44 | 166.82 | H-Bond (Protein Donor) |
| C2' | CG | GLU- 603 | 3.52 | 0 | Hydrophobic |
| C1' | CB | ALA- 805 | 4.03 | 0 | Hydrophobic |