3.000 Å
X-ray
2003-08-28
Name: | Chaperone protein ClpB |
---|---|
ID: | CLPB_THET8 |
AC: | Q9RA63 |
Organism: | Thermus thermophilus |
Reign: | Bacteria |
TaxID: | 300852 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 89 % |
B | 11 % |
B-Factor: | 74.070 |
---|---|
Number of residues: | 35 |
Including | |
Standard Amino Acids: | 35 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.375 | 884.250 |
% Hydrophobic | % Polar |
---|---|
35.50 | 64.50 |
According to VolSite |
HET Code: | ANP |
---|---|
Formula: | C10H13N6O12P3 |
Molecular weight: | 502.164 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 58.58 % |
Polar Surface area: | 322.68 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
74.094 | 6.58571 | 15.9109 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N6 | O | VAL- 561 | 2.71 | 140.5 | H-Bond (Ligand Donor) |
N1 | N | VAL- 561 | 2.66 | 162.9 | H-Bond (Protein Donor) |
N6 | O | VAL- 599 | 3.1 | 162.42 | H-Bond (Ligand Donor) |
O1A | N | GLY- 600 | 2.74 | 121.9 | H-Bond (Protein Donor) |
O1B | OG1 | THR- 602 | 3.29 | 121.45 | H-Bond (Protein Donor) |
O2B | OG1 | THR- 602 | 3.13 | 172.28 | H-Bond (Protein Donor) |
O1A | N | GLU- 603 | 3.44 | 166.82 | H-Bond (Protein Donor) |
C2' | CG | GLU- 603 | 3.52 | 0 | Hydrophobic |
C1' | CB | ALA- 805 | 4.03 | 0 | Hydrophobic |