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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4f9f GDP Putative glycosyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4f9f GDPPutative glycosyltransferase / 1.001
2qzs ADPGlycogen synthase 2.4.1.21 0.738
1uqu UPGTrehalose-6-phosphate synthase 2.4.1.15 0.730
1uqt U2FTrehalose-6-phosphate synthase 2.4.1.15 0.704
3cx4 ADPGlycogen synthase 2.4.1.21 0.698
2r4t ADPGlycogen synthase 2.4.1.21 0.686