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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4f9b 0SY Cell division cycle 7-related protein kinase 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4f9b 0SYCell division cycle 7-related protein kinase 2.7.11.1 0.824
3zrl ZRLGlycogen synthase kinase-3 beta 2.7.11.26 0.698
4bzo 676Serine/threonine-protein kinase pim-1 2.7.11.1 0.692
3she I85MAP kinase-activated protein kinase 3 2.7.11.1 0.665
3zrk ZRKGlycogen synthase kinase-3 beta 2.7.11.26 0.661