2.500 Å
X-ray
2012-05-18
| Name: | Cell division cycle 7-related protein kinase |
|---|---|
| ID: | CDC7_HUMAN |
| AC: | O00311 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 2.7.11.1 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 100 % |
| B-Factor: | 46.032 |
|---|---|
| Number of residues: | 24 |
| Including | |
| Standard Amino Acids: | 24 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.723 | 698.625 |
| % Hydrophobic | % Polar |
|---|---|
| 48.79 | 51.21 |
| According to VolSite | |

| HET Code: | 0SY |
|---|---|
| Formula: | C12H11N3O |
| Molecular weight: | 213.235 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 66.03 % |
| Polar Surface area: | 57.78 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 2 |
| H-Bond Donors: | 2 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| 29.1259 | -13.8143 | 29.7251 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CAE | CG1 | VAL- 72 | 4.39 | 0 | Hydrophobic |
| CAD | CB | ALA- 88 | 3.83 | 0 | Hydrophobic |
| OAA | NZ | LYS- 90 | 2.8 | 171.9 | H-Bond (Protein Donor) |
| CAD | CE | MET- 118 | 4.03 | 0 | Hydrophobic |
| CAD | SD | MET- 134 | 3.95 | 0 | Hydrophobic |
| NAI | N | LEU- 137 | 3.14 | 177.44 | H-Bond (Protein Donor) |
| CAM | CD1 | LEU- 184 | 3.71 | 0 | Hydrophobic |
| CAD | CG1 | VAL- 195 | 4.21 | 0 | Hydrophobic |
| NAJ | OD1 | ASP- 196 | 2.61 | 160.56 | H-Bond (Ligand Donor) |