2.500 Å
X-ray
2012-05-18
Name: | Cell division cycle 7-related protein kinase |
---|---|
ID: | CDC7_HUMAN |
AC: | O00311 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.1 |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 100 % |
B-Factor: | 46.032 |
---|---|
Number of residues: | 24 |
Including | |
Standard Amino Acids: | 24 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.723 | 698.625 |
% Hydrophobic | % Polar |
---|---|
48.79 | 51.21 |
According to VolSite |
HET Code: | 0SY |
---|---|
Formula: | C12H11N3O |
Molecular weight: | 213.235 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 66.03 % |
Polar Surface area: | 57.78 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 2 |
H-Bond Donors: | 2 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
29.1259 | -13.8143 | 29.7251 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CAE | CG1 | VAL- 72 | 4.39 | 0 | Hydrophobic |
CAD | CB | ALA- 88 | 3.83 | 0 | Hydrophobic |
OAA | NZ | LYS- 90 | 2.8 | 171.9 | H-Bond (Protein Donor) |
CAD | CE | MET- 118 | 4.03 | 0 | Hydrophobic |
CAD | SD | MET- 134 | 3.95 | 0 | Hydrophobic |
NAI | N | LEU- 137 | 3.14 | 177.44 | H-Bond (Protein Donor) |
CAM | CD1 | LEU- 184 | 3.71 | 0 | Hydrophobic |
CAD | CG1 | VAL- 195 | 4.21 | 0 | Hydrophobic |
NAJ | OD1 | ASP- 196 | 2.61 | 160.56 | H-Bond (Ligand Donor) |