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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4eo8 0S3 Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4eo8 0S3Genome polyprotein 2.7.7.48 1.128
2gir NN3Genome polyprotein 2.7.7.48 0.902
4ju6 1O6Genome polyprotein 2.7.7.48 0.885
4ju7 1O6Genome polyprotein 2.7.7.48 0.885
3mf5 HJZGenome polyprotein 2.7.7.48 0.849
2d3u CCTPolyprotein / 0.823
4jju 1MBGenome polyprotein 2.7.7.48 0.823
4jvq 1MLGenome polyprotein 2.7.7.48 0.801
4ju4 1O3Genome polyprotein 2.7.7.48 0.778
4j0a 1JLGenome polyprotein 2.7.7.48 0.764
4jtw 1NUGenome polyprotein 2.7.7.48 0.725
3phe C9ARNA-directed RNA polymerase / 0.720
2o5d VR1Genome polyprotein 2.7.7.48 0.719
2hwh RNAGenome polyprotein 2.7.7.48 0.712
4jtz 1NWGenome polyprotein 2.7.7.48 0.680
4ju2 1O0Genome polyprotein 2.7.7.48 0.679
4ju1 1NZGenome polyprotein 2.7.7.48 0.669