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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4egh 0OY Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4egh 0OYHeat shock protein HSP 90-alpha / 0.884
2yjw YJWHeat shock protein HSP 90-alpha / 0.747
3k97 4CDHeat shock protein HSP 90-alpha / 0.743
4egk RDCHeat shock protein HSP 90-alpha / 0.743
3hek BD0Heat shock protein HSP 90-alpha / 0.733
3k99 PFTHeat shock protein HSP 90-alpha / 0.726
2bt0 CT5Heat shock protein HSP 90-alpha / 0.724
2xjx XJXHeat shock protein HSP 90-alpha / 0.719
2ye4 2FYHeat shock protein HSP 90-alpha / 0.719
3ekr PY9Heat shock protein HSP 90-alpha / 0.719
3eko PYUHeat shock protein HSP 90-alpha / 0.706
2xab VHDHeat shock protein HSP 90-alpha / 0.702
2xjj L81Heat shock protein HSP 90-alpha / 0.702
2yi5 YI5Heat shock protein HSP 90-alpha / 0.695
2yi7 BZ8Heat shock protein HSP 90-alpha / 0.679
2xht C0YHeat shock protein HSP 90-alpha / 0.677
2xjg XJGHeat shock protein HSP 90-alpha / 0.676
2xd6 XD6ATP-dependent molecular chaperone HSP82 / 0.674
4efu EFUHeat shock protein HSP 90-alpha / 0.671
1u0z RDCEndoplasmin / 0.669
2hkj RDCType 2 DNA topoisomerase 6 subunit B / 0.666
1qy8 RDIEndoplasmin / 0.663
2cgf P2NATP-dependent molecular chaperone HSP82 / 0.662
2xx2 13CATP-dependent molecular chaperone HSP82 / 0.651