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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4eaj ATP 5'-AMP-activated protein kinase subunit gamma-1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4eaj ATP5'-AMP-activated protein kinase subunit gamma-1 / 1.133
2v92 ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.771
3fwr ADPTranscriptional repressor CcpN / 0.715
3fws ANPTranscriptional repressor CcpN / 0.711
4fry NADPutative signal-transduction protein with CBS domains / 0.690
4eak ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.689
2y8l ADP5'-AMP-activated protein kinase subunit gamma-1 / 0.685
2y8q ADP5'-AMP-activated protein kinase subunit gamma-1 / 0.677
4eag ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.672
3t4n ADP5'-AMP-activated protein kinase subunit gamma / 0.671
4yuz S4MSpermidine synthase, putative / 0.668
5ccx SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.655
5ccb SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.653
2xe8 ACPPhosphoglycerate kinase 1 2.7.2.3 0.650