Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4e32 DWN Methyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4e32 DWNMethyltransferase / 1.332
3ndj JHZMethyltransferase / 1.288
4e31 JHZMethyltransferase / 1.268
4e2w JHZMethyltransferase / 1.262
4e2z JHZMethyltransferase / 1.182
4e2y JHZMethyltransferase / 1.105
4e2x TYDMethyltransferase / 1.006
4rvg TYDD-mycarose 3-C-methyltransferase / 0.700
1yzq GNPRas-related protein Rab-6A / 0.665
5jlj GNPGTP-binding nuclear protein Ran / 0.660
2pup ADPMethylthioribose kinase 2.7.1.100 0.656
3tgp GNPGTPase HRas / 0.656
1ky2 GNPGTP-binding protein YPT7 / 0.654