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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4e2y JHZ Methyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4e2y JHZMethyltransferase / 1.313
4e2w JHZMethyltransferase / 1.174
3ndj JHZMethyltransferase / 1.158
4e2z JHZMethyltransferase / 1.155
4e31 JHZMethyltransferase / 1.109
4e32 DWNMethyltransferase / 1.105
4e2x TYDMethyltransferase / 0.989
4rvg TYDD-mycarose 3-C-methyltransferase / 0.685
1ky2 GNPGTP-binding protein YPT7 / 0.653