Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4e0i FAD Mitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4e0i FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 1.380
3w4y FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 1.140
4e0h FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.996
1oqc FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.930
3u2l FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.921
3mbg FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.915
4ldk FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.910
3tk0 FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.904
3u5s FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.882
3u2m FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.875
1jr8 FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.834
2hj3 FADFAD-linked sulfhydryl oxidase ERV1 / 0.810
3r7c FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.807
3td7 FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 0.803
1jra FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.790
3t58 FADSulfhydryl oxidase 1 1.8.3.2 0.774
3lli FADSulfhydryl oxidase 1 1.8.3.2 0.756
3ust FADAcMNPV orf92 / 0.745
3llk FADSulfhydryl oxidase 1 1.8.3.2 0.717
3gwl FADFAD-linked sulfhydryl oxidase 1.8.3.2 0.713
4p2l FADSulfhydryl oxidase 1 1.8.3.2 0.705
3qzy FADFAD-linked sulfhydryl oxidase / 0.697
3t59 FADSulfhydryl oxidase 1 1.8.3.2 0.693
4opl FDAConserved Archaeal protein / 0.692
4opt FDAConserved Archaeal protein / 0.678
4opu FDAConserved Archaeal protein / 0.669
3atr FDAConserved Archaeal protein / 0.668
1vdc FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.661
1rq1 FADEndoplasmic oxidoreductin-1 1.8.4 0.656