Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4e09 ACP Plasmid partitioning protein ParF

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4e09 ACPPlasmid partitioning protein ParF / 0.883
1jsz NDMCap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2.1.1.57 0.744
4e07 ACPPlasmid partitioning protein ParF / 0.685
3pcr GTPADP-ribosylation factor 6 / 0.673
1c3x 8IGPurine nucleoside phosphorylase 2.4.2.1 0.660
1i7c MGBS-adenosylmethionine decarboxylase proenzyme 4.1.1.50 0.660
2ofi ADK3-methyladenine DNA glycosylase I / 0.660
1h8h ADPATP synthase subunit alpha, mitochondrial / 0.656
1h8h ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.656
3tm0 ANPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.651
4wa7 GDPGTPase KRas / 0.651