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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dxl C5P 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4dxl C5P4-diphosphocytidyl-2-C-methyl-D-erythritol kinase / 0.872
4emd C5P4-diphosphocytidyl-2-C-methyl-D-erythritol kinase / 0.854
1oj4 CDM4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 2.7.1.148 0.707
2v8p CDP4-diphosphocytidyl-2-C-methyl-D-erythritol kinase / 0.688
2v2q NVG4-diphosphocytidyl-2-C-methyl-D-erythritol kinase / 0.673