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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dju 0KK Beta-secretase 1 3.4.23.46

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4dju 0KKBeta-secretase 1 3.4.23.46 0.900
4djw 0KPBeta-secretase 1 3.4.23.46 0.781
4b72 2FBBeta-secretase 1 3.4.23.46 0.757
4jp9 1M5Beta-secretase 1 3.4.23.46 0.719
4b05 32DBeta-secretase 1 3.4.23.46 0.709
3l5e BDWBeta-secretase 1 3.4.23.46 0.690
4jpe 1M7Beta-secretase 1 3.4.23.46 0.689
4l7j 1W2Beta-secretase 1 3.4.23.46 0.675
4ne0 ZZUHydroxylase / 0.660
3biv 11UProthrombin 3.4.21.5 0.655
4b1d 6TGBeta-secretase 1 3.4.23.46 0.653
4djx 0KQBeta-secretase 1 3.4.23.46 0.653
4frk DWDBeta-secretase 1 3.4.23.46 0.653
1sqt UI3Urokinase-type plasminogen activator 3.4.21.73 0.652
2zgx 29UProthrombin 3.4.21.5 0.650
4jpc 1M6Beta-secretase 1 3.4.23.46 0.650