Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dgn LU2 Casein kinase II subunit alpha 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
4dgn LU2Casein kinase II subunit alpha 2.7.11.1 1.091
4dgm AGICasein kinase II subunit alpha 2.7.11.1 1.014
1m2p HNACasein kinase II subunit alpha 2.7.11.1 0.763
3q9y TXQCasein kinase II subunit alpha 2.7.11.1 0.718
3q9w EMOCasein kinase II subunit alpha 2.7.11.1 0.708
1xo2 FSECyclin-dependent kinase 6 2.7.11.22 0.702
3q9x EMOCasein kinase II subunit alpha 2.7.11.1 0.699
4lm5 Q17Serine/threonine-protein kinase pim-1 2.7.11.1 0.668
1e8w QUEPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform 2.7.1.153 0.667
4dgo 0JWCasein kinase II subunit alpha 2.7.11.1 0.665
5auu LU2Death-associated protein kinase 1 2.7.11.1 0.659
2yiq YIQSerine/threonine-protein kinase Chk2 2.7.11.1 0.655
3axw TIDCasein kinase II subunit alpha 2.7.11.1 0.654
4bud 29FTankyrase-2 2.4.2.30 0.650