Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dch 4DC Glucokinase 2.7.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4dch 4DCGlucokinase 2.7.1.2 1.029
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4isg 1FYGlucokinase 2.7.1.2 0.719
3vf6 0H6Glucokinase 2.7.1.2 0.676
4e5f 0N7Polymerase acidic protein / 0.660
4ise 1FWGlucokinase 2.7.1.2 0.656
3imx B84Glucokinase 2.7.1.2 0.652