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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dbc 3QP Aspartate aminotransferase 2.6.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4dbc 3QPAspartate aminotransferase 2.6.1.1 1.213
3qpg 3QPAspartate aminotransferase 2.6.1.1 1.160
1cq7 PY5Aspartate aminotransferase 2.6.1.1 1.050
1x28 PGUAspartate aminotransferase 2.6.1.1 1.006
1ahg TYR_PLPAspartate aminotransferase 2.6.1.1 0.979
1arg PPDAspartate aminotransferase 2.6.1.1 0.871
1ivr CBAAspartate aminotransferase, mitochondrial 2.6.1.1 0.852
1arh PPDAspartate aminotransferase 2.6.1.1 0.850
1cq8 PY6Aspartate aminotransferase 2.6.1.1 0.840
1akc PPEAspartate aminotransferase, mitochondrial 2.6.1.1 0.835
1akb PPDAspartate aminotransferase, mitochondrial 2.6.1.1 0.830
1map KETAspartate aminotransferase, mitochondrial 2.6.1.1 0.816
1maq PGUAspartate aminotransferase, mitochondrial 2.6.1.1 0.805
3b1d PLSBetaC-S lyase / 0.758
3ei8 PL5LL-diaminopimelate aminotransferase, chloroplastic / 0.728
3aej AA5Methionine gamma-lyase / 0.710
4je5 PLPAromatic/aminoadipate aminotransferase 1 2.6.1.39 0.708
1cq6 PY4Aspartate aminotransferase 2.6.1.1 0.705
1dfo PLGSerine hydroxymethyltransferase 2.1.2.1 0.700
4wlj IK2Kynurenine--oxoglutarate transaminase 1 2.6.1.7 0.700
1aka PLPAspartate aminotransferase, mitochondrial 2.6.1.1 0.697
4itx IN5Cystathionine beta-lyase MetC 4.4.1.8 0.696
3h03 UBPGlutamate receptor 2 / 0.674
4geb 0LDKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.672
4ge4 0KEKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.671
4wxg 2BOSerine hydroxymethyltransferase / 0.670
1cl2 PPGCystathionine beta-lyase MetC 4.4.1.8 0.667
1dgh NDPCatalase 1.11.1.6 0.661
1e79 ADPATP synthase subunit alpha, mitochondrial / 0.655
1e79 ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.655
4bqy FNTEgl nine homolog 1 / 0.655
4gdy 0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.655
1oxo IK2Aspartate aminotransferase, mitochondrial 2.6.1.1 0.654
2hu4 G39Neuraminidase / 0.652