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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4d6q PD2 Lysine-specific demethylase 4D 1.14.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4d6q PD2Lysine-specific demethylase 4D 1.14.11 0.808
4lxl PD2Lysine-specific demethylase 4B 1.14.11 0.692
3pdq KC6Lysine-specific demethylase 4A 1.14.11 0.689
4bis 8HQLysine-specific demethylase 4A 1.14.11 0.688
1xzq FONtRNA modification GTPase MnmE 3.6.5 0.659
2vd7 PD2Lysine-specific demethylase 4A 1.14.11 0.656
3rvh HQ2Lysine-specific demethylase 4A 1.14.11 0.652
4gd4 0WSLysine-specific demethylase 4A 1.14.11 0.650