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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cjk H39 Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cjk H39Integrase / 1.010
4cjq VXOIntegrase / 1.005
4cj5 4VWIntegrase / 0.968
4cje Q31Integrase / 0.968
4cjp 4D2Integrase / 0.952
4cj4 S3GIntegrase / 0.950
4ck3 K1TIntegrase / 0.940
4cfb OM3Integrase / 0.803
3zsx N44Integrase / 0.795
4cgj NZLIntegrase / 0.789
4cee B0TIntegrase / 0.772
4cgd 8P3Integrase / 0.770
4cfd S8YIntegrase / 0.762
4cfc 7NVIntegrase / 0.724
3zsz OM2Integrase / 0.722
4cj3 E4FIntegrase / 0.701
4ced 9NSIntegrase / 0.693
4cju JNSIntegrase / 0.686
4c58 824Cyclin-G-associated kinase 2.7.11.1 0.660