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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cjf RVN Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cjf RVNIntegrase / 0.968
4cgh LOZIntegrase / 0.943
4cju JNSIntegrase / 0.941
3zt3 ZT4Integrase / 0.935
4cgf UJ6Integrase / 0.935
3zt2 ZT2Integrase / 0.927
4cj3 E4FIntegrase / 0.918
4cgi NZLIntegrase / 0.917
4chq CWUIntegrase / 0.917
4cie Y7NIntegrase / 0.917
4cgg K5QIntegrase / 0.879
4cf0 O5UIntegrase / 0.875
4cf2 3GMIntegrase / 0.872
3zsx N44Integrase / 0.867
4cfb OM3Integrase / 0.859
4cgj NZLIntegrase / 0.858
4cgd 8P3Integrase / 0.828
4cjs L0YIntegrase / 0.815
4ce9 O3NIntegrase / 0.814
4cec 2SSIntegrase / 0.806
3zsz OM2Integrase / 0.804
4cf8 V7HIntegrase / 0.803
4ck1 OM1Integrase / 0.790
4cig X0PIntegrase / 0.788
3zcm PX3Integrase / 0.785
3zt1 OM1Integrase / 0.785
3zsy OM3Integrase / 0.782
4cif JDXIntegrase / 0.782
4cjr FYMIntegrase / 0.777
3zsq O4NIntegrase / 0.750
3zt0 ZT0Integrase / 0.746
4ces NFWIntegrase / 0.717
4ced 9NSIntegrase / 0.703
4cfc 7NVIntegrase / 0.691
4cf1 IY7Integrase / 0.683
3zsr O3NIntegrase / 0.675
4ceo G0TIntegrase / 0.675
4cez O3NIntegrase / 0.675
4cfa WOPIntegrase / 0.663