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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cig X0P Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cig X0PIntegrase / 1.110
3zcm PX3Integrase / 1.084
3zsq O4NIntegrase / 1.081
4cjr FYMIntegrase / 1.054
3zt0 ZT0Integrase / 1.026
4cif JDXIntegrase / 1.000
3zsv ZSVIntegrase / 0.971
4ceb ZSVIntegrase / 0.971
4cfb OM3Integrase / 0.947
3zt1 OM1Integrase / 0.939
4ceo G0TIntegrase / 0.939
3zsx N44Integrase / 0.936
4cjs L0YIntegrase / 0.936
4ck1 OM1Integrase / 0.919
4ce9 O3NIntegrase / 0.909
4ceq QCHIntegrase / 0.909
3zsr O3NIntegrase / 0.904
4cez O3NIntegrase / 0.904
3zsy OM3Integrase / 0.879
4cf8 V7HIntegrase / 0.864
4cef D0TIntegrase / 0.845
4cju JNSIntegrase / 0.840
4ced 9NSIntegrase / 0.819
3zt2 ZT2Integrase / 0.814
4cgf UJ6Integrase / 0.811
3zsz OM2Integrase / 0.808
4cer VL4Integrase / 0.808
4cf0 O5UIntegrase / 0.803
4cgd 8P3Integrase / 0.793
4cjf RVNIntegrase / 0.788
4ces NFWIntegrase / 0.781
3zt3 ZT4Integrase / 0.758
4cgi NZLIntegrase / 0.742
4cgh LOZIntegrase / 0.741
4chq CWUIntegrase / 0.732
4cie Y7NIntegrase / 0.726
4cf2 3GMIntegrase / 0.701
4cee B0TIntegrase / 0.698
4cec 2SSIntegrase / 0.684
4cf1 IY7Integrase / 0.678