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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cif JDX Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cif JDXIntegrase / 1.061
3zcm PX3Integrase / 1.006
4cig X0PIntegrase / 1.000
3zsq O4NIntegrase / 0.994
4cjr FYMIntegrase / 0.988
3zt1 OM1Integrase / 0.985
4ck1 OM1Integrase / 0.985
3zt0 ZT0Integrase / 0.968
4ceo G0TIntegrase / 0.966
3zsv ZSVIntegrase / 0.961
4ceb ZSVIntegrase / 0.961
4cfb OM3Integrase / 0.907
4cef D0TIntegrase / 0.905
3zsx N44Integrase / 0.904
4cjs L0YIntegrase / 0.880
3zsr O3NIntegrase / 0.872
4cez O3NIntegrase / 0.872
4cf8 V7HIntegrase / 0.860
4ceq QCHIntegrase / 0.856
4cer VL4Integrase / 0.851
4ce9 O3NIntegrase / 0.841
3zsy OM3Integrase / 0.840
4cec 2SSIntegrase / 0.828
4cgd 8P3Integrase / 0.800
4cju JNSIntegrase / 0.793
4cjf RVNIntegrase / 0.782
3zt3 ZT4Integrase / 0.780
4chq CWUIntegrase / 0.776
4cgi NZLIntegrase / 0.774
3zsw ZSWIntegrase / 0.769
4cea ZSWIntegrase / 0.769
4cee B0TIntegrase / 0.768
4cf0 O5UIntegrase / 0.767
4cf1 IY7Integrase / 0.760
4cgh LOZIntegrase / 0.757
3zsz OM2Integrase / 0.755
4cgf UJ6Integrase / 0.748
4cgg K5QIntegrase / 0.743
4cie Y7NIntegrase / 0.737
4ces NFWIntegrase / 0.733
4cj3 E4FIntegrase / 0.728
3zt2 ZT2Integrase / 0.724
4ck3 K1TIntegrase / 0.677
4cf2 3GMIntegrase / 0.668
4ced 9NSIntegrase / 0.657