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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cf8 V7H Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cf8 V7HIntegrase / 1.133
4cef D0TIntegrase / 1.074
4ceq QCHIntegrase / 1.063
4ce9 O3NIntegrase / 1.055
4cec 2SSIntegrase / 1.042
4cer VL4Integrase / 1.031
3zsr O3NIntegrase / 1.014
4cez O3NIntegrase / 1.014
3zsv ZSVIntegrase / 1.008
4ceb ZSVIntegrase / 1.008
4ceo G0TIntegrase / 0.996
4cee B0TIntegrase / 0.958
4ced 9NSIntegrase / 0.957
4cf0 O5UIntegrase / 0.922
3zsw ZSWIntegrase / 0.917
4cea ZSWIntegrase / 0.917
4cfb OM3Integrase / 0.912
4cf1 IY7Integrase / 0.908
4cjr FYMIntegrase / 0.896
3zsx N44Integrase / 0.891
3zcm PX3Integrase / 0.880
4cjs L0YIntegrase / 0.874
4ck1 OM1Integrase / 0.869
3zt1 OM1Integrase / 0.868
4cig X0PIntegrase / 0.864
4cif JDXIntegrase / 0.860
4cf2 3GMIntegrase / 0.849
4cju JNSIntegrase / 0.834
3zt2 ZT2Integrase / 0.829
3zt0 ZT0Integrase / 0.821
3zt3 ZT4Integrase / 0.818
4cjf RVNIntegrase / 0.803
4cgg K5QIntegrase / 0.802
4cgd 8P3Integrase / 0.799
4cgh LOZIntegrase / 0.796
4chq CWUIntegrase / 0.796
3zsy OM3Integrase / 0.795
4cgf UJ6Integrase / 0.767
4ck3 K1TIntegrase / 0.764
4cgi NZLIntegrase / 0.756
3zsz OM2Integrase / 0.749
1i7g AZ2Peroxisome proliferator-activated receptor alpha / 0.655
3be2 RAJVascular endothelial growth factor receptor 2 2.7.10.1 0.650