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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cf2 3GM Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cf2 3GMIntegrase / 1.196
4cf1 IY7Integrase / 1.040
4cf0 O5UIntegrase / 1.034
4cj3 E4FIntegrase / 0.945
4cgg K5QIntegrase / 0.907
4chq CWUIntegrase / 0.894
4ceq QCHIntegrase / 0.892
4cgi NZLIntegrase / 0.876
3zsw ZSWIntegrase / 0.875
4cea ZSWIntegrase / 0.875
4cee B0TIntegrase / 0.874
4cjf RVNIntegrase / 0.872
4cgh LOZIntegrase / 0.867
4ce9 O3NIntegrase / 0.857
4cie Y7NIntegrase / 0.855
4cec 2SSIntegrase / 0.854
3zsr O3NIntegrase / 0.850
4cez O3NIntegrase / 0.850
4ced 9NSIntegrase / 0.849
4cf8 V7HIntegrase / 0.849
3zt2 ZT2Integrase / 0.847
4cer VL4Integrase / 0.843
3zsv ZSVIntegrase / 0.842
4ceb ZSVIntegrase / 0.842
4cgf UJ6Integrase / 0.839
4ces NFWIntegrase / 0.836
4ceo G0TIntegrase / 0.823
3zt3 ZT4Integrase / 0.812
4cju JNSIntegrase / 0.812
4ck3 K1TIntegrase / 0.805
4cjs L0YIntegrase / 0.800
4cjp 4D2Integrase / 0.776
4cfb OM3Integrase / 0.770
4cef D0TIntegrase / 0.763
4cgd 8P3Integrase / 0.757
3zsz OM2Integrase / 0.754
3zsq O4NIntegrase / 0.751
3zsx N44Integrase / 0.723
4cjr FYMIntegrase / 0.722
3zt1 OM1Integrase / 0.718
4ck1 OM1Integrase / 0.703
4cig X0PIntegrase / 0.701
4cgj NZLIntegrase / 0.699
3zsy OM3Integrase / 0.692
3zcm PX3Integrase / 0.668
4cif JDXIntegrase / 0.668
4cje Q31Integrase / 0.660
3zt0 ZT0Integrase / 0.654
2uw5 GVNcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.653