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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cf0 O5U Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4cf0 O5UIntegrase / 1.176
4cf1 IY7Integrase / 1.061
4cf2 3GMIntegrase / 1.034
4cj3 E4FIntegrase / 0.975
4cee B0TIntegrase / 0.973
4cec 2SSIntegrase / 0.961
4cie Y7NIntegrase / 0.947
4cgg K5QIntegrase / 0.945
4ceq QCHIntegrase / 0.935
3zsw ZSWIntegrase / 0.930
4cea ZSWIntegrase / 0.930
4cer VL4Integrase / 0.927
3zsr O3NIntegrase / 0.925
4cez O3NIntegrase / 0.925
4cf8 V7HIntegrase / 0.922
4chq CWUIntegrase / 0.921
4ces NFWIntegrase / 0.916
4cgf UJ6Integrase / 0.908
4cgj NZLIntegrase / 0.907
4cef D0TIntegrase / 0.906
4ce9 O3NIntegrase / 0.905
3zsv ZSVIntegrase / 0.899
4ceb ZSVIntegrase / 0.899
3zt3 ZT4Integrase / 0.898
4ced 9NSIntegrase / 0.891
4cgi NZLIntegrase / 0.885
4ceo G0TIntegrase / 0.877
4cjf RVNIntegrase / 0.875
4cgh LOZIntegrase / 0.869
3zsx N44Integrase / 0.829
4cfb OM3Integrase / 0.825
4cjs L0YIntegrase / 0.812
4cig X0PIntegrase / 0.803
4ck3 K1TIntegrase / 0.797
4cjr FYMIntegrase / 0.794
4cgd 8P3Integrase / 0.783
4cif JDXIntegrase / 0.767
3zsq O4NIntegrase / 0.760
4ck1 OM1Integrase / 0.751
3zsz OM2Integrase / 0.745
4cfd S8YIntegrase / 0.738
3zsy OM3Integrase / 0.725
3zt0 ZT0Integrase / 0.704
3zt2 ZT2Integrase / 0.703
4cju JNSIntegrase / 0.696