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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ces NFW Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ces NFWIntegrase / 1.063
4cer VL4Integrase / 1.036
4cec 2SSIntegrase / 0.987
4ceo G0TIntegrase / 0.975
4cef D0TIntegrase / 0.968
4cee B0TIntegrase / 0.960
3zsw ZSWIntegrase / 0.924
4cea ZSWIntegrase / 0.924
4cf0 O5UIntegrase / 0.916
4cf1 IY7Integrase / 0.898
4cf2 3GMIntegrase / 0.836
4ce9 O3NIntegrase / 0.831
4cfb OM3Integrase / 0.826
4ceq QCHIntegrase / 0.818
4ced 9NSIntegrase / 0.817
3zsr O3NIntegrase / 0.815
4cez O3NIntegrase / 0.815
4cgg K5QIntegrase / 0.806
4cjs L0YIntegrase / 0.804
4cgj NZLIntegrase / 0.792
4cgh LOZIntegrase / 0.791
3zt2 ZT2Integrase / 0.786
4cig X0PIntegrase / 0.781
4cjr FYMIntegrase / 0.781
3zsy OM3Integrase / 0.766
4cgd 8P3Integrase / 0.759
4cie Y7NIntegrase / 0.757
4cjq VXOIntegrase / 0.753
4cif JDXIntegrase / 0.733
4cj3 E4FIntegrase / 0.730
3zsz OM2Integrase / 0.725
4cfd S8YIntegrase / 0.725
4cjf RVNIntegrase / 0.717
3zt3 ZT4Integrase / 0.704
4cfc 7NVIntegrase / 0.687
3zsx N44Integrase / 0.676
3zcm PX3Integrase / 0.655
3zsq O4NIntegrase / 0.654
3bgz VX3Serine/threonine-protein kinase pim-1 2.7.11.1 0.651