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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ceq QCH Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ceq QCHIntegrase / 1.203
3zsr O3NIntegrase / 1.115
4cez O3NIntegrase / 1.115
4ce9 O3NIntegrase / 1.082
4cec 2SSIntegrase / 1.068
4cf8 V7HIntegrase / 1.063
4cer VL4Integrase / 1.061
4cef D0TIntegrase / 1.044
4cjs L0YIntegrase / 1.033
3zsv ZSVIntegrase / 1.032
4ceb ZSVIntegrase / 1.032
4ceo G0TIntegrase / 1.032
4cee B0TIntegrase / 0.984
4ced 9NSIntegrase / 0.968
3zsw ZSWIntegrase / 0.949
3zsx N44Integrase / 0.949
4cea ZSWIntegrase / 0.949
4cfb OM3Integrase / 0.941
4cf0 O5UIntegrase / 0.935
4cf1 IY7Integrase / 0.935
4cjr FYMIntegrase / 0.920
3zcm PX3Integrase / 0.910
4cig X0PIntegrase / 0.909
4cf2 3GMIntegrase / 0.892
3zsy OM3Integrase / 0.891
4ck1 OM1Integrase / 0.877
3zt1 OM1Integrase / 0.861
4cgg K5QIntegrase / 0.857
4cif JDXIntegrase / 0.856
4cgh LOZIntegrase / 0.832
4cgd 8P3Integrase / 0.827
4ces NFWIntegrase / 0.818
4cgf UJ6Integrase / 0.799
4chq CWUIntegrase / 0.789
4cgi NZLIntegrase / 0.785
4cie Y7NIntegrase / 0.783
3zsq O4NIntegrase / 0.740
3zt0 ZT0Integrase / 0.707
3zsz OM2Integrase / 0.668