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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ceo G0T Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ceo G0TIntegrase / 1.187
3zsv ZSVIntegrase / 1.092
4ceb ZSVIntegrase / 1.092
4ceq QCHIntegrase / 1.032
4ce9 O3NIntegrase / 1.025
4cef D0TIntegrase / 1.014
4cer VL4Integrase / 1.003
4cf8 V7HIntegrase / 0.996
4cec 2SSIntegrase / 0.989
3zt1 OM1Integrase / 0.982
4ces NFWIntegrase / 0.975
3zsr O3NIntegrase / 0.967
4cez O3NIntegrase / 0.967
4cif JDXIntegrase / 0.966
3zcm PX3Integrase / 0.963
4ck1 OM1Integrase / 0.962
4cig X0PIntegrase / 0.939
4cjr FYMIntegrase / 0.926
4cee B0TIntegrase / 0.922
4ced 9NSIntegrase / 0.915
4cjs L0YIntegrase / 0.886
3zsw ZSWIntegrase / 0.880
4cea ZSWIntegrase / 0.880
4cf0 O5UIntegrase / 0.877
4cf1 IY7Integrase / 0.872
3zt0 ZT0Integrase / 0.868
4cfb OM3Integrase / 0.854
3zsx N44Integrase / 0.853
4cf2 3GMIntegrase / 0.823
4cju JNSIntegrase / 0.822
3zsy OM3Integrase / 0.811
4cgd 8P3Integrase / 0.798
3zt2 ZT2Integrase / 0.797
3zt3 ZT4Integrase / 0.797
4cgg K5QIntegrase / 0.781
4cie Y7NIntegrase / 0.767
4chq CWUIntegrase / 0.765
4cgh LOZIntegrase / 0.761
4cgi NZLIntegrase / 0.735
3zsz OM2Integrase / 0.676
4cjf RVNIntegrase / 0.675
4cgj NZLIntegrase / 0.661