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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ced 9NS Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ced 9NSIntegrase / 1.009
4cec 2SSIntegrase / 0.978
3zsr O3NIntegrase / 0.975
4cez O3NIntegrase / 0.975
4ceq QCHIntegrase / 0.968
3zsw ZSWIntegrase / 0.961
4cea ZSWIntegrase / 0.961
4cer VL4Integrase / 0.961
4cee B0TIntegrase / 0.959
4cf8 V7HIntegrase / 0.957
4ce9 O3NIntegrase / 0.956
4cef D0TIntegrase / 0.927
4cf1 IY7Integrase / 0.923
4ceo G0TIntegrase / 0.915
3zsv ZSVIntegrase / 0.906
4ceb ZSVIntegrase / 0.906
4cf0 O5UIntegrase / 0.891
4cf2 3GMIntegrase / 0.849
4cjr FYMIntegrase / 0.835
4cfb OM3Integrase / 0.826
4cig X0PIntegrase / 0.819
4ces NFWIntegrase / 0.817
4cjs L0YIntegrase / 0.799
4cgg K5QIntegrase / 0.793
3zsz OM2Integrase / 0.783
4cgh LOZIntegrase / 0.770
3zsy OM3Integrase / 0.749
4cie Y7NIntegrase / 0.731
4cju JNSIntegrase / 0.718
4cjf RVNIntegrase / 0.703
4cjk H39Integrase / 0.693
4cgd 8P3Integrase / 0.683
4cjq VXOIntegrase / 0.660
3zsx N44Integrase / 0.657
4cif JDXIntegrase / 0.657
3zcm PX3Integrase / 0.656
3zsq O4NIntegrase / 0.655
4fsq HK3Serine/threonine-protein kinase Chk1 2.7.11.1 0.653