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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ceb ZSV Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zsv ZSVIntegrase / 1.192
4ceb ZSVIntegrase / 1.192
4ceo G0TIntegrase / 1.092
4ce9 O3NIntegrase / 1.064
4ceq QCHIntegrase / 1.032
3zsr O3NIntegrase / 1.026
4cec 2SSIntegrase / 1.026
4cef D0TIntegrase / 1.026
4cez O3NIntegrase / 1.026
3zcm PX3Integrase / 1.022
4cf8 V7HIntegrase / 1.008
4cer VL4Integrase / 1.007
4cjr FYMIntegrase / 0.987
4cig X0PIntegrase / 0.971
4cif JDXIntegrase / 0.961
3zt1 OM1Integrase / 0.957
4ck1 OM1Integrase / 0.957
3zt0 ZT0Integrase / 0.933
4ced 9NSIntegrase / 0.906
4cjs L0YIntegrase / 0.902
4cf0 O5UIntegrase / 0.899
4cf1 IY7Integrase / 0.896
3zsx N44Integrase / 0.864
4cfb OM3Integrase / 0.854
4cf2 3GMIntegrase / 0.842
3zsy OM3Integrase / 0.833
4cgg K5QIntegrase / 0.796
3zsq O4NIntegrase / 0.775
3zt3 ZT4Integrase / 0.762
4cgi NZLIntegrase / 0.758
4cgh LOZIntegrase / 0.753
4cee B0TIntegrase / 0.737
3zsw ZSWIntegrase / 0.736
4cea ZSWIntegrase / 0.736
4cie Y7NIntegrase / 0.715
4chq CWUIntegrase / 0.699
4cfd S8YIntegrase / 0.698
4cjp 4D2Integrase / 0.686
3zsz OM2Integrase / 0.661