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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4cea ZSW Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zsw ZSWIntegrase / 1.109
4cea ZSWIntegrase / 1.109
4cee B0TIntegrase / 1.048
4cec 2SSIntegrase / 1.002
4cer VL4Integrase / 0.988
4ced 9NSIntegrase / 0.961
4ceq QCHIntegrase / 0.949
4cef D0TIntegrase / 0.935
3zsr O3NIntegrase / 0.932
4cez O3NIntegrase / 0.932
4cf0 O5UIntegrase / 0.930
4ces NFWIntegrase / 0.924
4cf8 V7HIntegrase / 0.917
4cf1 IY7Integrase / 0.915
4ceo G0TIntegrase / 0.880
4cf2 3GMIntegrase / 0.875
4cjs L0YIntegrase / 0.857
4cgg K5QIntegrase / 0.826
3zsx N44Integrase / 0.824
4cfb OM3Integrase / 0.819
4cgj NZLIntegrase / 0.819
4cj3 E4FIntegrase / 0.815
4cgf UJ6Integrase / 0.800
4cgh LOZIntegrase / 0.799
3zsz OM2Integrase / 0.783
4cgi NZLIntegrase / 0.780
4chq CWUIntegrase / 0.769
4cif JDXIntegrase / 0.769
4ck3 K1TIntegrase / 0.762
3zsy OM3Integrase / 0.757
4cgd 8P3Integrase / 0.747
3zt0 ZT0Integrase / 0.741
3zsv ZSVIntegrase / 0.736
4ceb ZSVIntegrase / 0.736
4ce9 O3NIntegrase / 0.726
4cju JNSIntegrase / 0.651
4cjr FYMIntegrase / 0.650