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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ce9 O3N Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ce9 O3NIntegrase / 1.187
4cef D0TIntegrase / 1.090
4ceq QCHIntegrase / 1.082
3zsv ZSVIntegrase / 1.064
4ceb ZSVIntegrase / 1.064
4cf8 V7HIntegrase / 1.055
3zsr O3NIntegrase / 1.046
4cez O3NIntegrase / 1.046
4cer VL4Integrase / 1.043
4cec 2SSIntegrase / 1.033
4ceo G0TIntegrase / 1.025
3zsx N44Integrase / 1.008
4cfb OM3Integrase / 0.985
4ced 9NSIntegrase / 0.956
4cjs L0YIntegrase / 0.951
4cee B0TIntegrase / 0.948
4cf1 IY7Integrase / 0.920
4cig X0PIntegrase / 0.909
4cf0 O5UIntegrase / 0.905
3zt1 OM1Integrase / 0.902
3zcm PX3Integrase / 0.901
4ck1 OM1Integrase / 0.882
4cjr FYMIntegrase / 0.880
3zsq O4NIntegrase / 0.877
4cgg K5QIntegrase / 0.860
3zsy OM3Integrase / 0.858
4cf2 3GMIntegrase / 0.857
4cgd 8P3Integrase / 0.844
4cif JDXIntegrase / 0.841
3zt3 ZT4Integrase / 0.831
4ces NFWIntegrase / 0.831
4cjf RVNIntegrase / 0.814
3zt2 ZT2Integrase / 0.810
3zt0 ZT0Integrase / 0.804
4cgh LOZIntegrase / 0.801
4cie Y7NIntegrase / 0.784
4cgi NZLIntegrase / 0.764
4ck3 K1TIntegrase / 0.740
3zsw ZSWIntegrase / 0.726
4cea ZSWIntegrase / 0.726
4cgf UJ6Integrase / 0.713
4cfd S8YIntegrase / 0.700
4cgj NZLIntegrase / 0.692